FastQCFastQC Report
Mon 25 Sep 2023
Tp15_S15_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameTp15_S15_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11824770
Sequences flagged as poor quality0
Sequence length63-76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGCCGCGAAAATTCGTTTTTATTATTCAACATAGTTCCCTTCAAGAGCGATACAACGATTATAACGACCTTCC262410.22191552140126192No Hit
GCGGCCGCATCGATTTTCGTTCGTGAATACATGTTATAATAACTATAACTAATAACGTAACGTGACTGGCAAG206990.17504780219826685No Hit
CAATCATTAATGGTACAAGAGTGATGAAAATACCGTAGCCCATCCATTCAAGACCGGAACCATTGGTGAGTGTGT164210.13886950866697617No Hit
GCGGCCGCATCGATTTTCGTTCGTGAATACATGTTATAATAACTATAACT153390.1297192249828115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)